Optimized Next-Generation Sequencing Genotype-Haplotype Calling for Genome Variability Analysis
A simple SNP calling pipeline
bcftools filter on per-sample FORMAT fields · Issue #1010 · samtools/ bcftools · GitHub
Comparing -min-DP in vcftools with filter -i 'FORMAT/DP>10' in bcftools · Issue #1384 · samtools/bcftools · GitHub
PDF) How to extract and filter SNP data from the genotyping-by- sequencing (GBS) data in vcf format using bcftools
subset vcf by sample names | bcftools view tutorial - YouTube
Filtering of VCF Files
Filtering of VCF Files
bcftools filter | Filtering variants using the FILTER field - YouTube
Command Line - Andersen Lab Dry Guide
No unexpected CRISPR-Cas9 off-target activity revealed by trio sequencing of gene-edited mice | PLOS Genetics
Filtering of VCF Files
Cells | Free Full-Text | A Next Generation Sequencing-Based Protocol for Screening of Variants of Concern in Autism Spectrum Disorder
bcftools filter -e 'GT="het"' recognize GT 2/2 as heterozygous · Issue #1268 · samtools/bcftools · GitHub
Add Filter per sample · Issue #1226 · samtools/bcftools · GitHub
7. Variant calling — Genomics Tutorial 2020.2.0 documentation
Protocol for unbiased, consolidated variant calling from whole exome sequencing data - ScienceDirect
Filtering of VCF Files
The evaluation of Bcftools mpileup and GATK HaplotypeCaller for variant calling in non-human species | Scientific Reports
vcf_filter.py: VCF Filter Function — PPP 0.1.13 documentation
SNP/Variant Calling Tutorial
Mapping Summary and Extension
